Interactive 3D Visualization of Microscopic Image

User Instructions:

  1. Original Image:
    • The left side shows the original microscopic image.
  2. 3D Visualization:
    • Use your mouse or touch to rotate, zoom, and pan the 3D plot on the right.
    • On desktop: Click and drag to rotate, scroll to zoom, right-click and drag to pan.
    • On mobile: Use one finger to rotate, pinch to zoom, two fingers to pan.
  3. Color Options:
    • Use the checkboxes to toggle different shades of red in the 3D visualization.
    • Experiment with different combinations to highlight various features.
  4. 2D Shape Extraction:
    • Enter two Z-values in the input fields below the plots.
    • Click "Extract and Plot XY Shapes" to visualize the 2D shapes at those Z-levels.
    • The resulting 2D plot shows points at the specified Z-values in different colors.

Experiment with different settings to explore your microscopic image data in detail!